Detailed information of SNP:
|
SNP ID:
sf0716930842(Gbrowse)
Chromosome: chr07 Position: 16930842 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1301 | 93.16% | 6.84% |
| All Indica | 791 | 99.87% | 0.13% |
| All Japonica | 392 | 79.59% | 20.41% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 99.51% | 0.49% |
| Temperate Japonica | 281 | 91.81% | 8.19% |
| Tropical Japonica | 69 | 49.28% | 50.72% |
| Japonica Intermediate | 42 | 47.62% | 52.38% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716930842 | G->A | INTERGENIC | None |