Detailed information of SNP:
|
SNP ID:
sf0716933859(Gbrowse)
Chromosome: chr07 Position: 16933859 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 89.10% | 10.90% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 397 | 73.80% | 26.20% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 282 | 87.94% | 12.06% |
| Tropical Japonica | 71 | 38.03% | 61.97% |
| Japonica Intermediate | 44 | 40.91% | 59.09% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716933859 | C->T | LOC_Os07g28890(LOC_Os07g28890.1) | INTRON |