Detailed information of SNP:
|
SNP ID:
sf0716995812(Gbrowse)
Chromosome: chr07 Position: 16995812 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 63.64% | 36.36% |
| All Indica | 789 | 96.96% | 3.04% |
| All Japonica | 486 | 8.85% | 91.15% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 201 | 91.54% | 8.46% |
| Temperate Japonica | 324 | 11.42% | 88.58% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716995812 | T->C | INTERGENIC | None |