Detailed information of SNP:
|
SNP ID:
sf0716996086(Gbrowse)
Chromosome: chr07 Position: 16996086 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.20% | 36.80% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 494 | 6.48% | 93.52% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 332 | 7.83% | 92.17% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716996086 | A->G | INTERGENIC | None |