Detailed information of SNP:
|
SNP ID:
sf0716997443(Gbrowse)
Chromosome: chr07 Position: 16997443 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 63.14% | 36.86% |
| All Indica | 784 | 97.70% | 2.30% |
| All Japonica | 457 | 2.84% | 97.16% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 197 | 92.89% | 7.11% |
| Temperate Japonica | 295 | 2.03% | 97.97% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0716997443 | C->T | INTERGENIC | None |