Detailed information of SNP:
|
SNP ID:
sf0717003109(Gbrowse)
Chromosome: chr07 Position: 17003109 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 96.76% | 3.24% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717003109 | A->G | LOC_Os07g28980(LOC_Os07g28980.1) | INTRON |