Detailed information of SNP:
|
SNP ID:
sf0717003711(Gbrowse)
Chromosome: chr07 Position: 17003711 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 58.52% | 41.48% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 493 | 0.81% | 99.19% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 91 | 1.10% | 98.90% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717003711 | C->T | LOC_Os07g28980(LOC_Os07g28980.1) | INTRON |