Detailed information of SNP:
|
SNP ID:
sf0717003825(Gbrowse)
Chromosome: chr07 Position: 17003825 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.38% | 39.62% |
| All Indica | 796 | 95.98% | 4.02% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717003825 | C->T | LOC_Os07g28980(LOC_Os07g28980.1) | INTRON |