Detailed information of SNP:
|
SNP ID:
sf0717004982(Gbrowse)
Chromosome: chr07 Position: 17004982 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 60.44% | 39.56% |
| All Indica | 794 | 95.97% | 4.03% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717004982 | T->C | LOC_Os07g28980(LOC_Os07g28980.1) | INTRON |