Detailed information of SNP:
|
SNP ID:
sf0717005253(Gbrowse)
Chromosome: chr07 Position: 17005253 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 58.95% | 41.05% |
| All Indica | 794 | 93.58% | 6.42% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717005253 | G->T | LOC_Os07g28980(LOC_Os07g28980.1) | SNPs that introduce stop codons |