Detailed information of SNP:
|
SNP ID:
sf0717006320(Gbrowse)
Chromosome: chr07 Position: 17006320 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 56.15% | 43.85% |
| All Indica | 759 | 28.46% | 71.54% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 347 | 30.84% | 69.16% |
| Indica II | 208 | 18.75% | 81.25% |
| Indica Intermediate | 204 | 34.31% | 65.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717006320 | T->C | INTERGENIC | None |