Detailed information of SNP:
|
SNP ID:
sf0717007467(Gbrowse)
Chromosome: chr07 Position: 17007467 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 50.14% | 49.86% |
| All Indica | 777 | 19.95% | 80.05% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 361 | 18.28% | 81.72% |
| Indica II | 210 | 16.67% | 83.33% |
| Indica Intermediate | 206 | 26.21% | 73.79% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717007467 | A->G | INTERGENIC | None |