Detailed information of SNP:
|
SNP ID:
sf0717009908(Gbrowse)
Chromosome: chr07 Position: 17009908 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 54.05% | 45.95% |
| All Indica | 783 | 26.82% | 73.18% |
| All Japonica | 491 | 98.78% | 1.22% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 367 | 29.43% | 70.57% |
| Indica II | 212 | 23.11% | 76.89% |
| Indica Intermediate | 204 | 25.98% | 74.02% |
| Temperate Japonica | 329 | 98.78% | 1.22% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717009908 | A->C | INTERGENIC | None |