Detailed information of SNP:
|
SNP ID:
sf0717016842(Gbrowse)
Chromosome: chr07 Position: 17016842 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1347 | 63.25% | 36.75% |
| All Indica | 742 | 40.70% | 59.30% |
| All Japonica | 489 | 98.36% | 1.64% |
| Aus | 64 | 45.31% | 54.69% |
| Indica I | 335 | 48.06% | 51.94% |
| Indica II | 206 | 30.58% | 69.42% |
| Indica Intermediate | 201 | 38.81% | 61.19% |
| Temperate Japonica | 329 | 98.48% | 1.52% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717016842 | A->G | LOC_Os07g29010(LOC_Os07g29010.1) | INTRON |