Detailed information of SNP:
|
SNP ID:
sf0717030761(Gbrowse)
Chromosome: chr07 Position: 17030761 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 52.11% | 47.89% |
| All Indica | 783 | 28.10% | 71.90% |
| All Japonica | 496 | 90.73% | 9.27% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 363 | 35.54% | 64.46% |
| Indica II | 211 | 17.54% | 82.46% |
| Indica Intermediate | 209 | 25.84% | 74.16% |
| Temperate Japonica | 334 | 88.32% | 11.68% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717030761 | A->G | LOC_Os07g29050(LOC_Os07g29050.1) | INTRON |