Detailed information of SNP:
|
SNP ID:
sf0717044166(Gbrowse)
Chromosome: chr07 Position: 17044166 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 61.41% | 38.59% |
| All Indica | 796 | 97.74% | 2.26% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717044166 | A->G | LOC_Os07g29090(LOC_Os07g29090.1) | Non-Synonymous SNP |