Detailed information of SNP:
|
SNP ID:
sf0717053423(Gbrowse)
Chromosome: chr07 Position: 17053423 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 54.89% | 45.11% |
| All Indica | 783 | 88.76% | 11.24% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 368 | 91.58% | 8.42% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 207 | 76.81% | 23.19% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717053423 | A->G | LOC_Os07g29120(LOC_Os07g29120.1) | INTRON |