Detailed information of SNP:
|
SNP ID:
sf0717053697(Gbrowse)
Chromosome: chr07 Position: 17053697 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1314 | 53.12% | 46.88% |
| All Indica | 702 | 22.08% | 77.92% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 62 | 27.42% | 72.58% |
| Indica I | 319 | 18.81% | 81.19% |
| Indica II | 191 | 13.61% | 86.39% |
| Indica Intermediate | 192 | 35.94% | 64.06% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717053697 | G->A | LOC_Os07g29120(LOC_Os07g29120.1) | INTRON |