Detailed information of SNP:
|
SNP ID:
sf0717055159(Gbrowse)
Chromosome: chr07 Position: 17055159 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 55.92% | 44.08% |
| All Indica | 794 | 89.92% | 10.08% |
| All Japonica | 494 | 1.01% | 98.99% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717055159 | A->C | LOC_Os07g29120(LOC_Os07g29120.1) | Non-Synonymous SNP |