Detailed information of SNP:
|
SNP ID:
sf0717055391(Gbrowse)
Chromosome: chr07 Position: 17055391 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.89% | 38.11% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717055391 | A->G | LOC_Os07g29120(LOC_Os07g29120.1) | Non-Synonymous SNP |