Detailed information of SNP:
|
SNP ID:
sf0717055475(Gbrowse)
Chromosome: chr07 Position: 17055475 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.46% | 43.54% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 495 | 0.81% | 99.19% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717055475 | C->T | LOC_Os07g29120(LOC_Os07g29120.1) | Non-Synonymous SNP |