Detailed information of SNP:
|
SNP ID:
sf0717055897(Gbrowse)
Chromosome: chr07 Position: 17055897 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 57.88% | 42.12% |
| All Indica | 795 | 92.45% | 7.55% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717055897 | G->T | LOC_Os07g29120(LOC_Os07g29120.1) | Non-Synonymous SNP |