Detailed information of SNP:
|
SNP ID:
sf0717066460(Gbrowse)
Chromosome: chr07 Position: 17066460 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 98.30% | 1.70% |
| All Indica | 792 | 97.10% | 2.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717066460 | G->T | LOC_Os07g29150(LOC_Os07g29150.1) | Non-Synonymous SNP |