Detailed information of SNP:
|
SNP ID:
sf0717066921(Gbrowse)
Chromosome: chr07 Position: 17066921 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.79% | 37.21% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717066921 | A->G | LOC_Os07g29150(LOC_Os07g29150.1) | Synonymous |