Detailed information of SNP:
|
SNP ID:
sf0717071597(Gbrowse)
Chromosome: chr07 Position: 17071597 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 50.11% | 49.89% |
| All Indica | 778 | 20.05% | 79.95% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 366 | 19.40% | 80.60% |
| Indica II | 210 | 12.86% | 87.14% |
| Indica Intermediate | 202 | 28.71% | 71.29% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717071597 | C->T | INTERGENIC | None |