Detailed information of SNP:
|
SNP ID:
sf0717080062(Gbrowse)
Chromosome: chr07 Position: 17080062 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 58.79% | 41.21% |
| All Indica | 714 | 29.27% | 70.73% |
| All Japonica | 493 | 99.19% | 0.81% |
| Aus | 36 | 61.11% | 38.89% |
| Indica I | 328 | 35.98% | 64.02% |
| Indica II | 200 | 12.00% | 88.00% |
| Indica Intermediate | 186 | 36.02% | 63.98% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 73.53% | 26.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717080062 | G->A | INTERGENIC | None |