Detailed information of SNP:
|
SNP ID:
sf0717083743(Gbrowse)
Chromosome: chr07 Position: 17083743 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 67.22% | 32.78% |
| All Indica | 775 | 42.84% | 57.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 360 | 50.56% | 49.44% |
| Indica II | 208 | 22.60% | 77.40% |
| Indica Intermediate | 207 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717083743 | G->A | LOC_Os07g29180(LOC_Os07g29180.1) | Non-Synonymous SNP |