Detailed information of SNP:
|
SNP ID:
sf0717083746(Gbrowse)
Chromosome: chr07 Position: 17083746 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 67.51% | 32.49% |
| All Indica | 768 | 43.10% | 56.90% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 359 | 50.70% | 49.30% |
| Indica II | 205 | 22.44% | 77.56% |
| Indica Intermediate | 204 | 50.49% | 49.51% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717083746 | C->T | LOC_Os07g29180(LOC_Os07g29180.1) | SNPs that introduce stop codons |