Detailed information of SNP:
|
SNP ID:
sf0717085469(Gbrowse)
Chromosome: chr07 Position: 17085469 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1237 | 58.77% | 41.23% |
| All Indica | 674 | 33.53% | 66.47% |
| All Japonica | 492 | 90.85% | 9.15% |
| Aus | 22 | 72.73% | 27.27% |
| Indica I | 293 | 41.98% | 58.02% |
| Indica II | 203 | 12.81% | 87.19% |
| Indica Intermediate | 178 | 43.26% | 56.74% |
| Temperate Japonica | 334 | 88.32% | 11.68% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717085469 | T->C | LOC_Os07g29180(LOC_Os07g29180.1) | Synonymous |