Detailed information of SNP:
|
SNP ID:
sf0717099292(Gbrowse)
Chromosome: chr07 Position: 17099292 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 57.09% | 42.91% |
| All Indica | 792 | 91.04% | 8.96% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 371 | 93.26% | 6.74% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717099292 | G->T | INTERGENIC | None |