Detailed information of SNP:
|
SNP ID:
sf0717121372(Gbrowse)
Chromosome: chr07 Position: 17121372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.92% | 39.08% |
| All Indica | 797 | 35.13% | 64.87% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 49.33% | 50.67% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717121372 | C->T | INTERGENIC | None |