Detailed information of SNP:
|
SNP ID:
sf0717123105(Gbrowse)
Chromosome: chr07 Position: 17123105 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 57.51% | 42.49% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 21 | 33.33% | 66.67% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717123105 | G->A | INTERGENIC | None |