Detailed information of SNP:
|
SNP ID:
sf0717124082(Gbrowse)
Chromosome: chr07 Position: 17124082 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 61.40% | 38.60% |
| All Indica | 797 | 35.26% | 64.74% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 49.47% | 50.53% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717124082 | A->G | INTERGENIC | None |