Detailed information of SNP:
|
SNP ID:
sf0717124552(Gbrowse)
Chromosome: chr07 Position: 17124552 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.90% | 42.10% |
| All Indica | 798 | 35.21% | 64.79% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 49.73% | 50.27% |
| Indica II | 213 | 3.76% | 96.24% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717124552 | C->T | INTERGENIC | None |