Detailed information of SNP:
|
SNP ID:
sf0717124833(Gbrowse)
Chromosome: chr07 Position: 17124833 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 78.29% | 21.71% |
| All Indica | 796 | 67.59% | 32.41% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 51.87% | 48.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 334 | 87.43% | 12.57% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717124833 | A->C | INTERGENIC | None |