Detailed information of SNP:
|
SNP ID:
sf0717125182(Gbrowse)
Chromosome: chr07 Position: 17125182 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 58.22% | 41.78% |
| All Indica | 798 | 35.21% | 64.79% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 49.73% | 50.27% |
| Indica II | 213 | 3.76% | 96.24% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717125182 | T->C | INTERGENIC | None |