Detailed information of SNP:
|
SNP ID:
sf0717127019(Gbrowse)
Chromosome: chr07 Position: 17127019 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.96% | 38.04% |
| All Indica | 798 | 36.34% | 63.66% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 50.93% | 49.07% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717127019 | G->A | LOC_Os07g29224(LOC_Os07g29224.1) | UTR_3_PRIME |