Detailed information of SNP:
|
SNP ID:
sf0717174698(Gbrowse)
Chromosome: chr07 Position: 17174698 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 60.91% | 39.09% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 443 | 2.48% | 97.52% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 298 | 1.68% | 98.32% |
| Tropical Japonica | 87 | 4.60% | 95.40% |
| Japonica Intermediate | 58 | 3.45% | 96.55% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717174698 | T->G | INTERGENIC | None |