Detailed information of SNP:
SNP ID:
sf0717177137(Gbrowse)
Chromosome: chr07 Position: 17177137 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 57.79% | 42.21% |
All Indica | 799 | 96.75% | 3.25% |
All Japonica | 497 | 2.01% | 97.99% |
Aus | 67 | 16.42% | 83.58% |
Indica I | 375 | 97.60% | 2.40% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 211 | 94.31% | 5.69% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0717177137 | C->T | INTERGENIC | None |