Detailed information of SNP:



SNP ID: sf0717182606(Gbrowse)

Chromosome: chr07

Position: 17182606
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 98.03% 1.97%
All Indica798 99.50% 0.50%
All Japonica497 95.37% 4.63%
Aus67 100.00% 0.00%
Indica I375 98.93% 1.07%
Indica II213 100.00% 0.00%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica335 93.43% 6.57%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0717182606 T->C INTERGENIC None