Detailed information of SNP:
|
SNP ID:
sf0717184759(Gbrowse)
Chromosome: chr07 Position: 17184759 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 95.74% | 4.26% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 443 | 88.49% | 11.51% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 93.31% | 6.69% |
| Tropical Japonica | 80 | 73.75% | 26.25% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717184759 | G->A | INTERGENIC | None |