Detailed information of SNP:
|
SNP ID:
sf0717191839(Gbrowse)
Chromosome: chr07 Position: 17191839 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 76.41% | 23.59% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 452 | 37.61% | 62.39% |
| Aus | 60 | 85.00% | 15.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 304 | 36.51% | 63.49% |
| Tropical Japonica | 85 | 28.24% | 71.76% |
| Japonica Intermediate | 63 | 55.56% | 44.44% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717191839 | A->G | INTERGENIC | None |