Detailed information of SNP:
|
SNP ID:
sf0717196108(Gbrowse)
Chromosome: chr07 Position: 17196108 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.99% | 44.01% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717196108 | G->A | INTERGENIC | None |