Detailed information of SNP:
|
SNP ID:
sf0717213539(Gbrowse)
Chromosome: chr07 Position: 17213539 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 54.46% | 45.54% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717213539 | G->A | LOC_Os07g29340(LOC_Os07g29340.1) | Non-Synonymous SNP |