Detailed information of SNP:
|
SNP ID:
sf0717216957(Gbrowse)
Chromosome: chr07 Position: 17216957 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 58.15% | 41.85% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717216957 | G->T | LOC_Os07g29350(LOC_Os07g29350.1) | INTRON |