Detailed information of SNP:



SNP ID: sf0717226495(Gbrowse)

Chromosome: chr07

Position: 17226495
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 54.87% 45.13%
All Indica799 93.74% 6.26%
All Japonica497 1.21% 98.79%
Aus67 0.00% 100.00%
Indica I375 95.73% 4.27%
Indica II213 98.12% 1.88%
Indica Intermediate211 85.78% 14.22%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 56.10% 43.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0717226495 C->T INTERGENIC None