Detailed information of SNP:
|
SNP ID:
sf0717271430(Gbrowse)
Chromosome: chr07 Position: 17271430 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.16% | 45.84% |
| All Indica | 798 | 21.80% | 78.20% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 31.73% | 68.27% |
| Indica II | 213 | 3.76% | 96.24% |
| Indica Intermediate | 210 | 22.38% | 77.62% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717271430 | C->T | LOC_Os07g29420(LOC_Os07g29420.4) | INTRON |
| sf0717271430 | C->T | LOC_Os07g29420(LOC_Os07g29420.3) | INTRON |
| sf0717271430 | C->T | LOC_Os07g29420(LOC_Os07g29420.2) | INTRON |
| sf0717271430 | C->T | LOC_Os07g29420(LOC_Os07g29420.1) | INTRON |