Detailed information of SNP:
|
SNP ID:
sf0717274320(Gbrowse)
Chromosome: chr07 Position: 17274320 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 53.20% | 46.80% |
| All Indica | 790 | 91.39% | 8.61% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717274320 | G->T | LOC_Os07g29430(LOC_Os07g29430.1) | Non-Synonymous SNP |