Detailed information of SNP:
|
SNP ID:
sf0717284481(Gbrowse)
Chromosome: chr07 Position: 17284481 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 53.96% | 46.04% |
| All Indica | 799 | 22.03% | 77.97% |
| All Japonica | 493 | 98.78% | 1.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 32.00% | 68.00% |
| Indica II | 213 | 3.29% | 96.71% |
| Indica Intermediate | 211 | 23.22% | 76.78% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717284481 | G->T | INTERGENIC | None |