Detailed information of SNP:
|
SNP ID:
sf0717306589(Gbrowse)
Chromosome: chr07 Position: 17306589 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 54.25% | 45.75% |
| All Indica | 794 | 90.93% | 9.07% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 371 | 90.57% | 9.43% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0717306589 | C->T | LOC_Os07g29480(LOC_Os07g29480.1) | Non-Synonymous SNP |